5JJZ Protein Binding date Apr 25, 2016
title Chromo Domain Of Human Chromodomain Protein, Y-Like 2
authors A.Dong, L.Dombrovski, P.Loppnau, W.Tempel, C.Bountra, C.H.Arrowsm A.M.Edwards, J.Min, H.Wu, Structural Genomics Consortium (Sgc)
compound source
Molecule: Chromodomain Y-Like Protein 2
Chain: A
Fragment: Unp Residues 2-66
Synonym: Cdy-Like 2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdyl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)V2rprare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl

Molecule: Lys-Lys-Lys-Ala-Arg-Mly-Ser-Ala-Gly-Ala-Ala-Lys-T
Chain: B
Engineered: Yes
Other_details: Sequence From Human Histone H1k26me(21-33)
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 61 2 2
R_factor 0.230 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.962 57.962 98.824 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand MLY enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (5jjz.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (5jjz.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5JJZ
  • CSU: Contacts of Structural Units for 5JJZ
  • Structure Factors (393 Kb)
  • Retrieve 5JJZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JJZ from S2C, [Save to disk]
  • Re-refined 5jjz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JJZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JJZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jjz_A] [5jjz_B] [5jjz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JJZ: [CHROMO ] by SMART
    • Other resources with information on 5JJZ
  • Community annotation for 5JJZ at PDBWiki (http://pdbwiki.org)

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