5JMO Hydrolase Antibody date Apr 29, 2016
title X-Ray Structure Of Furin In Complex With The Inhibitory Anti
authors S.O.Dahms, M.E.Than
compound source
Molecule: Furin
Chain: A, B
Synonym: Dibasic-Processing Enzyme,Paired Basic Amino Acid Cleaving Enzyme,Pace;
Ec: 3.4.21.75
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Furin, Fur, Pace, Pcsk3
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s

Molecule: Camelid Vhh Fragment
Chain: C, D
Engineered: Yes

Organism_scientific: Camelus Dromedarius
Organism_common: Arabian Camel
Organism_taxid: 9838
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cmk-Inhibitor
Chain: G, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 2 21
R_factor 0.163 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.775 50.039 144.244 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 0QE, AR7, CA, DKA, NA, NAG enzyme Hydrolase E.C.3.4.21.75 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of a furin-antibody complex explains non-competitive inhibition by steric exclusion of substrate conformers., Dahms SO, Creemers JW, Schaub Y, Bourenkov GP, Zogg T, Brandstetter H, Than ME, Sci Rep. 2016 Sep 27;6:34303. doi: 10.1038/srep34303. PMID:27670069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (5jmo.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (5jmo.pdb2.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 5JMO
  • CSU: Contacts of Structural Units for 5JMO
  • Structure Factors (477 Kb)
  • Retrieve 5JMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JMO from S2C, [Save to disk]
  • Re-refined 5jmo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jmo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jmo_H] [5jmo_A] [5jmo_C] [5jmo] [5jmo_B] [5jmo_D] [5jmo_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JMO
  • Community annotation for 5JMO at PDBWiki (http://pdbwiki.org)

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