5JNQ Transferase Antibiotic date Apr 30, 2016
title Mray Tunicamycin Complex
authors P.Johansson
compound source
Molecule: Phospho-N-Acetylmuramoyl-Pentapeptide-Transferase
Chain: A
Synonym: Udp-Murnac-Pentapeptide Phosphotransferase
Ec: 2.7.8.13
Engineered: Yes
Organism_scientific: Clostridium Bolteae 90a9
Organism_taxid: 997894
Gene: Mray, Hmpref1085_00623
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.226 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.640 105.540 134.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand BOG, PLM, TUM enzyme Transferase E.C.2.7.8.13 BRENDA
Gene HMPREF1085
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMraY-antibiotic complex reveals details of tunicamycin mode of action., Hakulinen JK, Hering J, Branden G, Chen H, Snijder A, Ek M, Johansson P, Nat Chem Biol. 2017 Jan 9. doi: 10.1038/nchembio.2270. PMID:28068312
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5jnq.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 5JNQ
  • CSU: Contacts of Structural Units for 5JNQ
  • Structure Factors (402 Kb)
  • Retrieve 5JNQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JNQ from S2C, [Save to disk]
  • Re-refined 5jnq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JNQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JNQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jnq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jnq_A] [5jnq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JNQ
  • Community annotation for 5JNQ at PDBWiki (http://pdbwiki.org)

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