5JNR Hydrolase date Apr 30, 2016
title Crystal Structure Of Human Low Molecular Weight Protein Tyro Phosphatase (Lmptp) Type A
authors S.M.Stanford, A.E.Aleshin, R.C.Liddington, L.Bankston, G.Cadwell N.Bottini
compound source
Molecule: Low Molecular Weight Phosphotyrosine Protein Phos
Chain: A
Synonym: Lmw-Ptpase,Adipocyte Acid Phosphatase,Low Molecula Cytosolic Acid Phosphatase,Red Cell Acid Phosphatase 1;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t
symmetry Space Group: P 21 21 21
R_factor 0.163 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.404 55.863 96.457 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein tyrosine phosphatase...
  • non-membrane spanning protei...


  • Primary referenceDiabetes reversal by inhibition of the low-molecular-weight tyrosine phosphatase., Stanford SM, Aleshin AE, Zhang V, Ardecky RJ, Hedrick MP, Zou J, Ganji SR, Bliss MR, Yamamoto F, Bobkov AA, Kiselar J, Liu Y, Cadwell GW, Khare S, Yu J, Barquilla A, Chung TD, Mustelin T, Schenk S, Bankston LA, Liddington RC, Pinkerton AB, Bottini N, Nat Chem Biol. 2017 Mar 27. doi: 10.1038/nchembio.2344. PMID:28346406
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (5jnr.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 5JNR
  • Structure Factors (767 Kb)
  • Retrieve 5JNR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JNR from S2C, [Save to disk]
  • Re-refined 5jnr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JNR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JNR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jnr] [5jnr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JNR
  • Community annotation for 5JNR at PDBWiki (http://pdbwiki.org)

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