5JOG Hydroxylase date May 02, 2016
title Crystal Structure Of Csn5(2-257) In Complex With Cns5i-3
authors M.Renatus, C.Wiesmann
compound source
Molecule: Cop9 Signalosome Complex Subunit 5
Chain: A
Synonym: Signalosome Subunit 5,Jun Activation Domain-Bindin 1;
Ec: 3.4.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops5, Csn5, Jab1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.208 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.363 101.363 68.602 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.46 Å
ligand 6LT, ZN enzyme Hydrolase E.C.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTargeted inhibition of the COP9 signalosome for treatment of cancer., Schlierf A, Altmann E, Quancard J, Jefferson AB, Assenberg R, Renatus M, Jones M, Hassiepen U, Schaefer M, Kiffe M, Weiss A, Wiesmann C, Sedrani R, Eder J, Martoglio B, Nat Commun. 2016 Oct 24;7:13166. doi: 10.1038/ncomms13166. PMID:27774986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (5jog.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 5JOG
  • CSU: Contacts of Structural Units for 5JOG
  • Structure Factors (365 Kb)
  • Retrieve 5JOG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JOG from S2C, [Save to disk]
  • Re-refined 5jog structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JOG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JOG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jog_A] [5jog]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JOG: [JAB_MPN ] by SMART
    • Other resources with information on 5JOG
  • Community annotation for 5JOG at PDBWiki (http://pdbwiki.org)

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