5JQ9 Transferase Transferase Inhibitor date May 04, 2016
title Yersinia Pestis Dhps With Pterine-Sulfa Conjugate Compound 1
authors Y.Wu, S.W.White
compound source
Molecule: Dihydropteroate Synthase
Chain: A, B
Synonym: Dhps,Dihydropteroate Pyrophosphorylase
Ec: 2.5.1.15
Engineered: Yes
Organism_scientific: Yersinia Pestis Kim D27
Organism_taxid: 687916
Strain: Kim D27
Gene: Folp, Ypd27_2690
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.687 49.897 74.279 90.00 89.78 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 6MB, EDO enzyme Transferase E.C.2.5.1.15 BRENDA
Gene YPD27
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePterin-sulfa conjugates as dihydropteroate synthase inhibitors and antibacterial agents., Zhao Y, Shadrick WR, Wallace MJ, Wu Y, Griffith EC, Qi J, Yun MK, White SW, Lee RE, Bioorg Med Chem Lett. 2016 Aug 15;26(16):3950-4. doi: 10.1016/j.bmcl.2016.07.006., Epub 2016 Jul 4. PMID:27423480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (5jq9.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 5JQ9
  • CSU: Contacts of Structural Units for 5JQ9
  • Structure Factors (447 Kb)
  • Retrieve 5JQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JQ9 from S2C, [Save to disk]
  • Re-refined 5jq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JQ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jq9] [5jq9_B] [5jq9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JQ9
  • Community annotation for 5JQ9 at PDBWiki (http://pdbwiki.org)

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