5JQY Oxidoreductase date May 05, 2016
title Aspartylasparaginyl Beta-Hydroxylase (Asph)Oxygenase And Tp In Complex With Manganese, N-Oxalylglycine And Factor X Sub Peptide Fragment(39mer-4ser)
authors M.A.Mcdonough, I.Pfeffer
compound source
Molecule: Aspartylasparaginyl Beta-Hydroxylase
Chain: A
Fragment: Unp Residues 330-758
Synonym: Aspartate Beta-Hydroxylase,Asp Beta-Hydroxylase,Pe Aspartate Beta-Dioxygenase;
Ec: 1.14.11.16
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Asph, Bah
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a(+)

Molecule: Coagulation Factor X
Chain: B
Fragment: Unp Residues 86-124
Synonym: Stuart Factor,Stuart-Prower Factor
Ec: 3.4.21.6
Engineered: Yes
Other_details: Four Cysteines From Wildtype Sequence Have B Changed To Serines
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.170 89.540 123.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand ACT, MN, OGA enzyme Oxidoreductase E.C.1.14.11.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (5jqy.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 5JQY
  • CSU: Contacts of Structural Units for 5JQY
  • Structure Factors (488 Kb)
  • Retrieve 5JQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JQY from S2C, [Save to disk]
  • Re-refined 5jqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JQY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jqy_B] [5jqy] [5jqy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JQY
  • Community annotation for 5JQY at PDBWiki (http://pdbwiki.org)

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