5JRB Dna Binding Protein date May 06, 2016
title Rad52(1-212) K102ak133ae202a Mutant
authors M.Saotome, K.Saito, H.Kurumizaka, W.Kagawa
compound source
Molecule: Dna Repair Protein Rad52 Homolog
Chain: A, B, C, D, E, F, G, H, I, J, K
Fragment: Unp Residues 1-212
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rad52
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.955 98.516 116.367 90.00 91.99 90.00
method X-Ray Diffractionresolution 2.41 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (336 Kb) [Save to disk]
  • Biological Unit Coordinates (5jrb.pdb1.gz) 328 Kb
  • CSU: Contacts of Structural Units for 5JRB
  • Structure Factors (3204 Kb)
  • Retrieve 5JRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JRB from S2C, [Save to disk]
  • Re-refined 5jrb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JRB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jrb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jrb_F] [5jrb_K] [5jrb_H] [5jrb_B] [5jrb_J] [5jrb_G] [5jrb_E] [5jrb_A] [5jrb] [5jrb_I] [5jrb_D] [5jrb_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JRB
  • Community annotation for 5JRB at PDBWiki (http://pdbwiki.org)

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