5JS6 Oxidoreductase date May 07, 2016
title Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase 14 Variant In Complex With Nad.
authors N.Bertoletti, S.Marchais-Oberwinkler, A.Heine, G.Klebe
compound source
Molecule: 17-Beta-Hydroxysteroid Dehydrogenase 14
Chain: A
Synonym: 17-Beta-Hsd 14,17-Beta-Hydroxysteroid Dehydrogenas Dehydrogenasereductase Sdr Family Member 10,Retinal Short- Dehydrogenasereductase Retsdr3,Short Chain Dehydrogenaser Family 47c Member 1;
Ec: 1.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsd17b14, Dhrs10, Sdr3, Sdr47c1, Unq502pro474
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss
symmetry Space Group: I 2 3
R_factor 0.166 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.206 130.206 130.206 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, NAD, PG4, PGE enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew Insights into Human 17beta-Hydroxysteroid Dehydrogenase Type 14: First Crystal Structures in Complex with a Steroidal Ligand and with a Potent Nonsteroidal Inhibitor., Bertoletti N, Braun F, Lepage M, Moller G, Adamski J, Heine A, Klebe G, Marchais-Oberwinkler S, J Med Chem. 2016 Jul 12. PMID:27362750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (5js6.pdb1.gz) 336 Kb
  • LPC: Ligand-Protein Contacts for 5JS6
  • CSU: Contacts of Structural Units for 5JS6
  • Structure Factors (228 Kb)
  • Retrieve 5JS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JS6 from S2C, [Save to disk]
  • Re-refined 5js6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JS6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5js6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5js6] [5js6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JS6
  • Community annotation for 5JS6 at PDBWiki (http://pdbwiki.org)

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