5JSF Oxidoreductase date May 08, 2016
title Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase 14 Variant In Complex With Nad.
authors N.Bertoletti, S.Marchais-Oberwinkler, A.Heine, G.Klebe
compound source
Molecule: 17-Beta-Hydroxysteroid Dehydrogenase 14
Chain: A
Synonym: 17-Beta-Hsd 14,17-Beta-Hydroxysteroid Dehydrogenas Dehydrogenasereductase Sdr Family Member 10,Retinal Short- Dehydrogenasereductase Retsdr3,Short Chain Dehydrogenaser Family 47c Member 1;
Ec: 1.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsd17b14, Dhrs10, Sdr3, Sdr47c1, Unq502pro474
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Plyss
symmetry Space Group: I 2 3
R_factor 0.165 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.256 130.256 130.256 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand CL, NA, NAD, PGE enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew Insights into Human 17beta-Hydroxysteroid Dehydrogenase Type 14: First Crystal Structures in Complex with a Steroidal Ligand and with a Potent Nonsteroidal Inhibitor., Bertoletti N, Braun F, Lepage M, Moller G, Adamski J, Heine A, Klebe G, Marchais-Oberwinkler S, J Med Chem. 2016 Jul 12. PMID:27362750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (5jsf.pdb1.gz) 328 Kb
  • LPC: Ligand-Protein Contacts for 5JSF
  • CSU: Contacts of Structural Units for 5JSF
  • Structure Factors (287 Kb)
  • Retrieve 5JSF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JSF from S2C, [Save to disk]
  • Re-refined 5jsf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JSF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JSF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jsf_A] [5jsf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JSF
  • Community annotation for 5JSF at PDBWiki (http://pdbwiki.org)

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