5JTO Chaperone Hydrolase date May 09, 2016
title The Structure Of Chaperone Secb In Complex With Unstructured Binding Site D
authors C.Huang, T.Saio, P.Rossi, C.G.Kalodimos
compound source
Molecule: Protein-Export Protein Secb
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Secb, Z5036, Ecs4487
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Alkaline Phosphatase
Chain: E, F, G, H
Fragment: Residues 271-310
Synonym: Apase
Ec: 3.1.3.1
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Phoa, B0383, Jw0374
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4654 Kb) [Save to disk]
  • Biological Unit Coordinates (5jto.pdb1.gz) 234 Kb
  • CSU: Contacts of Structural Units for 5JTO
  • Original NMR restraints for 5JTO from PDB
  • Retrieve 5JTO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JTO from S2C, [Save to disk]
  • View 5JTO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JTO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jto from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jto_A] [5jto_H] [5jto_C] [5jto_D] [5jto_E] [5jto_G] [5jto_B] [5jto_F] [5jto]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JTO
  • Community annotation for 5JTO at PDBWiki (http://pdbwiki.org)

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