5JU9 Hydrolase date May 10, 2016
title Structure Of A Beta-1,4-Mannanase, Ssgh134, In Complex With
authors Y.Jin, M.Petricevic, E.D.Goddard-Borger, S.J.Williams, G.J.Davie
compound source
Molecule: Beta-1,4-Mannanase
Chain: A
Ec: 3.2.1.78
Engineered: Yes
Organism_scientific: Streptomyces Sp. Nrrl B-24361
Organism_taxid: 354193
Strain: Nrrl B-24484
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Codon Plus
Expression_system_plasmid: Phismalp
symmetry Space Group: P 21 21 21
R_factor 0.131 R_Free 0.153
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.680 53.630 82.140 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.18 Å
ligand BMA, CL, MAN enzyme Hydrolase E.C.3.2.1.78 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA beta-Mannanase with a Lysozyme-like Fold and a Novel Molecular Catalytic Mechanism., Jin Y, Petricevic M, John A, Raich L, Jenkins H, Portela De Souza L, Cuskin F, Gilbert HJ, Rovira C, Goddard-Borger ED, Williams SJ, Davies GJ, ACS Cent Sci. 2016 Dec 28;2(12):896-903. doi: 10.1021/acscentsci.6b00232. Epub, 2016 Nov 8. PMID:28058278
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (5ju9.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5JU9
  • CSU: Contacts of Structural Units for 5JU9
  • Structure Factors (3361 Kb)
  • Retrieve 5JU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JU9 from S2C, [Save to disk]
  • Re-refined 5ju9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JU9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ju9_A] [5ju9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JU9
  • Community annotation for 5JU9 at PDBWiki (http://pdbwiki.org)

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