5JUY	Apoptosis	date	May 10, 2016
title	Active Human Apoptosome With Procaspase-9
authors	T.C.Cheng, C.Hong, I.V.Akey, S.Yuan, C.W.Akey
compound		source
Molecule: Apoptotic Protease-Activating Factor 1 Chain: A, B, C, D, E, F, G Synonym: Apaf-1 Engineered: Yes Other_details: Without N-Terminal Cards		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apaf1, Kiaa0413 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Cytochrome C Chain: H, I, J, K, L, M, N		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913
Molecule: Caspase-9 Chain: O, P, Q, R Fragment: N-Terminal Caspase Recognition Domain Synonym: Casp-9,Apoptotic Protease Mch-6,Apoptotic Protease Activating Factor 3,Apaf-3,Ice-Like Apoptotic Protease 6,Ic Ec: 3.4.22.62 Engineered: Yes Other_details: N-Terminal Caspase Recognition Domain (Card) Procaspase-9		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Casp9, Mch6 Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.10 Å
ligand	DTP, HEC	enzyme	Hydrolase E.C.3.4.22.62 BRENDA
Gene Ontology	Chain Function Process Component F, E, C, A, B, D, G N, K, M, L, J, H, I Q, O, P, R
Primary reference	A near atomic structure of the active human apoptosome., Cheng TC, Hong C, Akey IV, Yuan S, Akey CW, Elife. 2016 Oct 4;5. pii: e17755. doi: 10.7554/eLife.17755. PMID:27697150

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1305 Kb) [Save to disk] Biological Unit Coordinates (5juy.pdb1.gz) 1294 Kb LPC: Ligand-Protein Contacts for 5JUY CSU: Contacts of Structural Units for 5JUY Retrieve 5JUY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JUY from S2C, [Save to disk]

View 5JUY in 3D

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Visual 3D analysis of 5JUY

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5juy] [5juy_O] [5juy_F] [5juy_J] [5juy_C] [5juy_I] [5juy_E] [5juy_L] [5juy_M] [5juy_A] [5juy_H] [5juy_Q] [5juy_K] [5juy_D] [5juy_N] [5juy_G] [5juy_P] [5juy_B] [5juy_R] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5JUY: [CARD] [WD40 ] by SMART

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