5JVP Motor Protein date May 11, 2016
title The Neck-Linker And Alpha 7 Helix Of Homo Sapiens Cenp-E
authors R.K.Phillips, I.Rayment
compound source
Molecule: Chimera Protein Of Centromere-Associated Protein Microtubule-Associated Protein Rpeb Family Member 1;
Chain: A, B, C, D, E, F
Fragment: Unp Q02224 Residues 336-375,Unp Q15691 Residues 2
Synonym: Centromere Protein E,Cenp-E,Kinesin-Related Protei Apc-Binding Protein Eb1,End-Binding Protein 1,Eb1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cenpe, Mapre1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 32 2 1
R_factor 0.237 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.609 100.609 107.627 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CD, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceFamily-specific kinesin structures reveal neck-linker length based on initiation of the coiled-coil., Phillips RK, Peter LG, Gilbert SP, Rayment I, J Biol Chem. 2016 Jul 26. pii: jbc.M116.737577. PMID:27462072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (5jvp.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (5jvp.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (5jvp.pdb3.gz) 65 Kb
  • Biological Unit Coordinates (5jvp.pdb4.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5JVP
  • CSU: Contacts of Structural Units for 5JVP
  • Structure Factors (499 Kb)
  • Retrieve 5JVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JVP from S2C, [Save to disk]
  • Re-refined 5jvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JVP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jvp_A] [5jvp] [5jvp_F] [5jvp_E] [5jvp_B] [5jvp_C] [5jvp_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JVP
  • Community annotation for 5JVP at PDBWiki (http://pdbwiki.org)

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