OCA Atlas for 5JWE

5JWE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, H, D, F

Primary reference

Crystal structures of H-2Db in complex with the LCMV-derived peptides GP92 and GP392 explain pleiotropic effects of glycosylation on antigen presentation and immunogenicity., Hafstrand I, Badia-Martinez D, Josey BJ, Norstrom M, Buratto J, Pellegrino S, Duru AD, Sandalova T, Achour A, PLoS One. 2017 Dec 18;12(12):e0189584. doi: 10.1371/journal.pone.0189584., eCollection 2017. PMID:29253009

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (528 Kb) [Save to disk]

Biological Unit Coordinates (5jwe.pdb1.gz) 135 Kb

Biological Unit Coordinates (5jwe.pdb2.gz) 136 Kb

Biological Unit Coordinates (5jwe.pdb3.gz) 129 Kb

Biological Unit Coordinates (5jwe.pdb4.gz) 133 Kb

LPC: Ligand-Protein Contacts for 5JWE

CSU: Contacts of Structural Units for 5JWE

Structure Factors (1785 Kb)

Retrieve 5JWE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5JWE from S2C, [Save to disk]

Re-refined 5jwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JWE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jwe] [5jwe_A] [5jwe_B] [5jwe_C] [5jwe_D] [5jwe_E] [5jwe_F] [5jwe_G] [5jwe_H] [5jwe_P] [5jwe_Q] [5jwe_R] [5jwe_S]

SWISS-PROT database:

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