5JY7 Isomerase Transferase date May 13, 2016
title Complex Of Mycobacterium Smegmatis Trehalose Synthase With M
authors K.Futterer, A.A.Kermani, G.S.Besra
compound source
Molecule: Trehalose Synthaseamylase Tres
Chain: A, B, C, D, E, F, G, H
Synonym: Maltose Alpha-D-Glucosyltransferase,Mtase
Ec: 3.2.1.1,5.4.99.16
Engineered: Yes
Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Gene: Tres, Msmeg_6515, Msmei_6343
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Maltokinase
Chain: I, J, K, L, M, N, O, P
Synonym: Mak,Maltose-1-Phosphate Synthase
Ec: 2.7.1.175
Engineered: Yes

Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Gene: Mak, Pep2, Msmeg_6514, Msmei_6342
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 43
R_factor 0.261 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
315.680 315.680 124.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.60 Å
ligand CA enzyme Hydrolase E.C.3.2.1.1 BRENDA
Gene MSMEG ; MSMEG ; MSMEI ; MSMEI
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, B, H, D, G


N, K, M, L, J, O, P, I


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2443 Kb) [Save to disk]
  • Biological Unit Coordinates (5jy7.pdb1.gz) 1264 Kb
  • Biological Unit Coordinates (5jy7.pdb2.gz) 1176 Kb
  • LPC: Ligand-Protein Contacts for 5JY7
  • CSU: Contacts of Structural Units for 5JY7
  • Structure Factors (3072 Kb)
  • Retrieve 5JY7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JY7 from S2C, [Save to disk]
  • Re-refined 5jy7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JY7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JY7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jy7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jy7_M] [5jy7_N] [5jy7_O] [5jy7_D] [5jy7_P] [5jy7_F] [5jy7_E] [5jy7_L] [5jy7_H] [5jy7_B] [5jy7_I] [5jy7_A] [5jy7_K] [5jy7_G] [5jy7_C] [5jy7] [5jy7_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JY7
  • Community annotation for 5JY7 at PDBWiki (http://pdbwiki.org)

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