5JZ8 Oxidoreductase date May 16, 2016
title Aspartylasparaginyl Beta-Hydroxylase (Asph)Oxygenase And Tp In Complex With Manganese, N-Oxalylglycine, And Factor X Su Peptide Fragment (39mer)
authors M.A.Mcdonough, I.Pfeffer
compound source
Molecule: Aspartylasparaginyl Beta-Hydroxylase
Chain: A
Synonym: Aspartate Beta-Hydroxylase,Asp Beta-Hydroxylase,Pe Aspartate Beta-Dioxygenase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Asph, Bah
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a(+)

Molecule: Coagulation Factor X
Chain: B
Synonym: Stuart Factor,Stuart-Prower Factor
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.216
length a length b length c angle alpha angle beta angle gamma
50.244 91.020 122.666 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT, MN, OGA enzyme Oxidoreductase E.C. BRENDA


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (5jz8.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 5JZ8
  • CSU: Contacts of Structural Units for 5JZ8
  • Structure Factors (307 Kb)
  • Retrieve 5JZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JZ8 from S2C, [Save to disk]
  • Re-refined 5jz8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JZ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jz8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jz8_A] [5jz8_B] [5jz8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JZ8
  • Community annotation for 5JZ8 at PDBWiki (http://pdbwiki.org)

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