5JZJ Transferase date May 17, 2016
title Crystal Structure Of Dclk1-Kd In Complex With Amppn
authors O.Patel, I.Lucet
compound source
Molecule: Serinethreonine-Protein Kinase Dclk1
Chain: A, B
Fragment: Unp Residues 372-649
Synonym: Doublecortin Domain-Containing Protein 3a,Doubleco And Cam Kinase-Like 1,Doublecortin-Like Kinase 1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dclk1, Dcamkl1, Dcdc3a, Kiaa0369
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcold
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.390 81.270 59.610 90.00 92.10 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand AN2, MG, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiochemical and Structural Insights into Doublecortin-like Kinase Domain 1., Patel O, Dai W, Mentzel M, Griffin MD, Serindoux J, Gay Y, Fischer S, Sterle S, Kropp A, Burns CJ, Ernst M, Buchert M, Lucet IS, Structure. 2016 Sep 6;24(9):1550-61. doi: 10.1016/j.str.2016.07.008. Epub 2016, Aug 18. PMID:27545623
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (5jzj.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (5jzj.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5JZJ
  • CSU: Contacts of Structural Units for 5JZJ
  • Structure Factors (3920 Kb)
  • Retrieve 5JZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JZJ from S2C, [Save to disk]
  • Re-refined 5jzj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JZJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jzj_A] [5jzj] [5jzj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JZJ: [S_TKc ] by SMART
  • Other resources with information on 5JZJ
  • Community annotation for 5JZJ at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science