5K16	Hydrolase	date	May 17, 2016
title	Crystal Structure Of Free Ubiquitin-Specific Protease 12
authors	H.Li, A.D.D'Andrea, N.Zheng
compound		source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 12 Chain: A, B Fragment: Residues 16-370 Synonym: Deubiquitinating Enzyme 12,Ubiquitin Thioesterase Ubiquitin-Hydrolyzing Enzyme 1,Ubiquitin-Specific-Processin 12; Ec: 3.4.19.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Usp12, Ubh1, Usp12l1 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
symmetry	Space Group: P 21 21 21	R_factor 0.190 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.396 109.636 134.193 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	GOL, ZN	enzyme	Hydrolase E.C.3.4.19.12 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20., Li H, Lim KS, Kim H, Hinds TR, Jo U, Mao H, Weller CE, Sun J, Chatterjee C, D'Andrea AD, Zheng N, Mol Cell. 2016 Jul 21;63(2):249-60. doi: 10.1016/j.molcel.2016.05.031. Epub 2016 , Jun 30. PMID:27373336

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (5k16.pdb1.gz) 53 Kb Biological Unit Coordinates (5k16.pdb2.gz) 54 Kb Biological Unit Coordinates (5k16.pdb3.gz) 104 Kb LPC: Ligand-Protein Contacts for 5K16 CSU: Contacts of Structural Units for 5K16 Structure Factors (360 Kb) Retrieve 5K16 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5K16 from S2C, [Save to disk] Re-refined 5k16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5K16

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5k16_A] [5k16] [5k16_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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