5K19 Unknown Function date May 17, 2016
title Crystal Structure Of Wd Repeat-Containing Protein 20
authors H.Li, A.D.D'Andrea, N.Zheng
compound source
Molecule: Wd Repeat-Containing Protein 20
Chain: A, B, C
Synonym: Protein Dmr
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr20
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 31
R_factor 0.191 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.014 120.014 95.307 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAllosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20., Li H, Lim KS, Kim H, Hinds TR, Jo U, Mao H, Weller CE, Sun J, Chatterjee C, D'Andrea AD, Zheng N, Mol Cell. 2016 Jul 21;63(2):249-60. doi: 10.1016/j.molcel.2016.05.031. Epub 2016 , Jun 30. PMID:27373336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (5k19.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (5k19.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (5k19.pdb3.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 5K19
  • CSU: Contacts of Structural Units for 5K19
  • Structure Factors (737 Kb)
  • Retrieve 5K19 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K19 from S2C, [Save to disk]
  • Re-refined 5k19 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K19 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5K19
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k19] [5k19_A] [5k19_C] [5k19_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5K19: [WD40 ] by SMART
    • Other resources with information on 5K19
  • Community annotation for 5K19 at PDBWiki (http://pdbwiki.org)

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