5K1C	Hydrolase	date	May 18, 2016
title	Crystal Structure Of The Uaf1wdr20usp12 Complex
authors	H.Li, A.D.D'Andrea, N.Zheng
compound		source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 12 Chain: A Fragment: Residues 16-370 Synonym: Deubiquitinating Enzyme 12,Ubiquitin Thioesterase Ubiquitin-Hydrolyzing Enzyme 1,Ubiquitin-Specific-Processin 12; Ec: 3.4.19.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Usp12, Ubh1, Usp12l1 Expression_system: Baculovirus Expression Vector Pfastbac1- Expression_system_taxid: 274590
Molecule: Wd Repeat-Containing Protein 48 Chain: B Fragment: Residues 1-563 Synonym: Usp1-Associated Factor 1,Wd Repeat Endosomal Prote Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr48, Kiaa1449, Uaf1 Expression_system: Baculovirus Expression Vector Pfastbac1- Expression_system_taxid: 274590
Molecule: Wd Repeat-Containing Protein 20 Chain: C Synonym: Protein Dmr Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr20 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
symmetry	Space Group: P 61 2 2	R_factor 0.230 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 217.903 217.903 223.819 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	PO4, TAM, ZN	enzyme	Hydrolase E.C.3.4.19.12 BRENDA
Gene Ontology	Chain Function Process Component A C
Primary reference	Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20., Li H, Lim KS, Kim H, Hinds TR, Jo U, Mao H, Weller CE, Sun J, Chatterjee C, D'Andrea AD, Zheng N, Mol Cell. 2016 Jul 21;63(2):249-60. doi: 10.1016/j.molcel.2016.05.031. Epub 2016 , Jun 30. PMID:27373336

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk] Biological Unit Coordinates (5k1c.pdb1.gz) 194 Kb LPC: Ligand-Protein Contacts for 5K1C CSU: Contacts of Structural Units for 5K1C Structure Factors (1333 Kb) Retrieve 5K1C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5K1C from S2C, [Save to disk] Re-refined 5k1c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5K1C

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5k1c] [5k1c_B] [5k1c_A] [5k1c_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5K1C: [WD40 ] by SMART

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