5K1Y Transcription Dna date May 18, 2016
title P2(1) Structure Of Pnob8 Aspa-Dna Complex
authors M.Schumacher
compound source
Molecule: Aspa
Chain: C, D, A, B, E, F
Engineered: Yes
Organism_scientific: Sulfolobus Sp. Nob8h2
Organism_taxid: 84600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (33-Mer)
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (33-Mer)
Chain: N
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.366 72.306 90.508 90.00 114.72 90.00
method X-Ray Diffractionresolution 2.97 Å
note 5K1Y supersedes 5FC0, 4RU7
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (5k1y.pdb1.gz) 114 Kb
  • CSU: Contacts of Structural Units for 5K1Y
  • Structure Factors (222 Kb)
  • Retrieve 5K1Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K1Y from S2C, [Save to disk]
  • Re-refined 5k1y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5K1Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5K1Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k1y_E] [5k1y_N] [5k1y_P] [5k1y_B] [5k1y_A] [5k1y_D] [5k1y_F] [5k1y_C] [5k1y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5K1Y: [HTH_ARSR ] by SMART
  • Other resources with information on 5K1Y
  • Community annotation for 5K1Y at PDBWiki (http://pdbwiki.org)

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