5K23 Hydrolase Transporter Protein Protein Bi date May 18, 2016
title Crystal Structure Of The Complex Between Human Phosphatase P The Oxidized State With The Bateman Domain Of Human Magnesi Transporter Cnnm3
authors I.Gulerez, G.Kozlov, K.Gehring
compound source
Molecule: Protein Tyrosine Phosphatase Type Iva 2
Chain: A
Synonym: Hu-Pp-1,Ov-1,Ptp(Caaxii),Protein-Tyrosine Phosphat Protein-Tyrosine Phosphatase Of Regenerating Liver 2,Prl-2;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptp4a2, Prl2, Ptpcaax2, Bm-008
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pdest17

Molecule: Metal Transporter Cnnm3
Chain: C
Synonym: Ancient Conserved Domain-Containing Protein 3,Cycl
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cnnm3, Acdp3
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pdest15
symmetry Space Group: I 2 2 2
R_factor 0.205 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.156 124.490 159.048 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.96 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein tyrosine phosphatase...
  • prenylated protein tyrosine ...


  • Primary referencePRL3 phosphatase active site is required for binding the putative magnesium transporter CNNM3., Zhang H, Kozlov G, Li X, Wu H, Gulerez I, Gehring K, Sci Rep. 2017 Mar 3;7(1):48. doi: 10.1038/s41598-017-00147-2. PMID:28246390
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5k23.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (5k23.pdb2.gz) 190 Kb
  • CSU: Contacts of Structural Units for 5K23
  • Structure Factors (235 Kb)
  • Retrieve 5K23 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K23 from S2C, [Save to disk]
  • Re-refined 5k23 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5K23 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5K23
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k23] [5k23_A] [5k23_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5K23: [PTPc_DSPc ] by SMART
  • Other resources with information on 5K23
  • Community annotation for 5K23 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science