5K28 Transferase date May 18, 2016
title Structure Of The Unbound Sh3 Domain Of Mlk3
authors S.K.Kall, A.Lavie
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 11
Chain: A, B
Fragment: Sh3 Domain (Unp Residues 44-105)
Synonym: Mixed Lineage Kinase 3,Src-Homology 3 Domain-Conta Proline-Rich Kinase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k11, Mlk3, Ptk1, Sprk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.186 R_Free 0.213
length a length b length c angle alpha angle beta angle gamma
57.892 57.892 76.122 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
enzyme Transferase E.C. BRENDA
Primary referenceIdentification of two distinct peptide-binding pockets in the SH3 domain of human mixed-lineage kinase 3., Kokoszka ME, Kall SL, Khosla S, McGinnis JE, Lavie A, Kay BK, J Biol Chem. 2018 Aug 31;293(35):13553-13565. doi: 10.1074/jbc.RA117.000262. Epub, 2018 Jul 6. PMID:29980598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (5k28.pdb1.gz) 12 Kb
  • Biological Unit Coordinates (5k28.pdb2.gz) 12 Kb
  • CSU: Contacts of Structural Units for 5K28
  • Structure Factors (509 Kb)
  • Retrieve 5K28 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K28 from S2C, [Save to disk]
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  • Visual 3D analysis of 5K28
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5k28 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k28_B] [5k28_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5K28
  • Community annotation for 5K28 at PDBWiki (http://pdbwiki.org)

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