5K53 Metal Binding Protein date May 23, 2016
title Crystal Structures Of Aldehyde Deformylating Oxygenase From Oscillatoria Sp. Knua011
authors A.K.Park, H-.W.Kim
compound source
Molecule: Aldehyde Deformylating Oxygenase
Chain: A, B
Engineered: Yes
Organism_scientific: Oscillatoria Sp.
Organism_taxid: 1159
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.012 78.265 108.861 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FE, STE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (5k53.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (5k53.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 5K53
  • CSU: Contacts of Structural Units for 5K53
  • Structure Factors (782 Kb)
  • Retrieve 5K53 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K53 from S2C, [Save to disk]
  • Re-refined 5k53 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5K53 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5K53
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k53_A] [5k53] [5k53_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5K53
  • Community annotation for 5K53 at PDBWiki (http://pdbwiki.org)

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