5K58 Dna Binding Protein Dna date May 23, 2016
title Structure Of The K. Pneumonia Slma-Dna Complex Bound To The Of The Cell Division Protein Ftsz
authors M.Schumacher
compound source
Molecule: Nucleoid Occlusion Factor Slma
Chain: E, F, A, B
Fragment: Unp Residues 9-198
Engineered: Yes
Organism_scientific: Escherichia Coli O139:H28 (Strain E243 Etec);
Organism_taxid: 331111
Strain: E24377a Etec
Gene: Slma, Ece24377a_4142
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gptpgpapgptpapcptpcpapc)-3'
Chain: R, T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Octapeptide
Chain: L, K, N, M
Engineered: Yes
Other_details: Leu-Asp-Ile-Pro-Ala-Phe-Leu-Arg

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 32
R_factor 0.247 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.800 84.800 161.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.77 Å
Gene ECE24377A
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B


Primary referenceStructures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ., Schumacher MA, Zeng W, Proc Natl Acad Sci U S A. 2016 May 3;113(18):4988-93. doi:, 10.1073/pnas.1602327113. Epub 2016 Apr 18. PMID:27091999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5k58.pdb1.gz) 140 Kb
  • CSU: Contacts of Structural Units for 5K58
  • Structure Factors (274 Kb)
  • Retrieve 5K58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K58 from S2C, [Save to disk]
  • Re-refined 5k58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5K58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5K58
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5k58 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k58_A] [5k58_E] [5k58_T] [5k58] [5k58_B] [5k58_N] [5k58_K] [5k58_M] [5k58_F] [5k58_R] [5k58_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5K58
  • Community annotation for 5K58 at PDBWiki (http://pdbwiki.org)

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