5K7D	Rna Dna	date	May 26, 2016
title	The Structure Of Native Pistol Ribozyme, Bound To Iridium
authors	A.Ren, D.Patel
compound		source
Molecule: Rna 47-Mer Chain: A Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dnarna 11-Mer Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 32 2 1	R_factor 0.190 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.573 56.573 88.297 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.68 Å
ligand	IRI, MG	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (5k7d.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 5K7D CSU: Contacts of Structural Units for 5K7D Structure Factors (44 Kb) Retrieve 5K7D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5K7D from S2C, [Save to disk] Re-refined 5k7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5K7D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5K7D

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5k7d] [5k7d_B] [5k7d_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5K7D

Community annotation for 5K7D at PDBWiki (http://pdbwiki.org)

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