5K7N Protein Fibril date May 26, 2016
title Microed Structure Of Tau Vqivyk Peptide At 1.1 A Resolution
authors M.J.De La Cruz, J.Hattne, D.Shi, P.Seidler, J.Rodriguez, F.E.Reye M.R.Sawaya, D.Cascio, D.Eisenberg, T.Gonen
compound source
Molecule: Vqivyk
Chain: Z
Synonym: Tau Peptide
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.420 4.990 37.170 90.00 111.55 90.00
method Electron Crystallographyresolution 1.10 Å
Primary referenceAtomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED., de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T, Nat Methods. 2017 Feb 13;14(4):399-402. doi: 10.1038/nmeth.4178. PMID:28192420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (5k7n.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 5K7N
  • Structure Factors (46 Kb)
  • Retrieve 5K7N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K7N from S2C, [Save to disk]
  • Re-refined 5k7n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K7N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5K7N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k7n_Z] [5k7n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5K7N
  • Community annotation for 5K7N at PDBWiki (http://pdbwiki.org)

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