5K9L Apoptosis date Jun 01, 2016
title Beclin 2 Ccd N187l Mutant Homodimer
authors M.Su, S.Sinha
compound source
Molecule: Beclin-2
Chain: A, B, C, D
Fragment: Unp Residues 158-250
Synonym: Beclin-1 Autophagy-Related Pseudogene 1,Beclin-1-L Protein 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Becn2, Becn1l1, Becn1p1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.971 44.709 94.899 90.00 130.57 90.00
method X-Ray Diffractionresolution 2.52 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBECN2 interacts with ATG14 through a metastable coiled-coil to mediate autophagy., Su M, Li Y, Wyborny S, Neau D, Chakravarthy S, Levine B, Colbert CL, Sinha SC, Protein Sci. 2017 Feb 20. doi: 10.1002/pro.3140. PMID:28218432
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (5k9l.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (5k9l.pdb2.gz) 58 Kb
  • CSU: Contacts of Structural Units for 5K9L
  • Structure Factors (887 Kb)
  • Retrieve 5K9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K9L from S2C, [Save to disk]
  • Re-refined 5k9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5K9L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k9l_A] [5k9l] [5k9l_C] [5k9l_D] [5k9l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5K9L
  • Community annotation for 5K9L at PDBWiki (http://pdbwiki.org)

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