5KAJ	Oxidoreductase	date	Jun 01, 2016
title	Crystal Structure Of A Dioxygenase In The Crotonase Superfam P21, A319c Mutant
authors	K.Li, E.N.Fielding, H.L.Condurso, S.D.Bruner
compound		source
Molecule: (3,5-Dihydroxyphenyl)Acetyl-Coa 1,2-Dioxygenase Chain: A, B, C, D, E, F, G, H, I, J, K, L Ec: 1.13.11.80 Engineered: Yes Mutation: Yes		Organism_scientific: Streptomyces Toyocaensis Organism_taxid: 55952 Gene: Bu52_01220 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
symmetry	Space Group: P 1 21 1	R_factor 0.193 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 139.723 170.658 155.765 90.00 89.89 90.00
method	X-Ray Diffraction	resolution	2.68 Å
ligand	YE2	enzyme	Oxidoreductase E.C.1.13.11.80 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (828 Kb) [Save to disk] Biological Unit Coordinates (5kaj.pdb1.gz) 213 Kb Biological Unit Coordinates (5kaj.pdb2.gz) 212 Kb Biological Unit Coordinates (5kaj.pdb3.gz) 212 Kb Biological Unit Coordinates (5kaj.pdb4.gz) 212 Kb LPC: Ligand-Protein Contacts for 5KAJ CSU: Contacts of Structural Units for 5KAJ Structure Factors (13780 Kb) Retrieve 5KAJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KAJ from S2C, [Save to disk] Re-refined 5kaj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KAJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KAJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kaj_I] [5kaj_E] [5kaj_B] [5kaj_H] [5kaj_F] [5kaj_K] [5kaj_G] [5kaj_D] [5kaj_J] [5kaj_C] [5kaj_A] [5kaj_L] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5KAJ

Community annotation for 5KAJ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---