5KAZ Signaling Protein date Jun 02, 2016
title Human Sh2d1b Structure
authors M.Taha, E.Nezerwa, H.J.Nam
compound source
Molecule: Sh2 Domain-Containing Protein 1b
Chain: A
Synonym: Ewsfli1-Activated Transcript 2,Eat-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sh2d1b, Eat2
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11
symmetry Space Group: I 4 2 2
R_factor 0.189 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.983 66.983 105.155 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SO4 enzyme
Primary referenceThe X-ray Crystallographic Structure of Human EAT2 (SH2D1B)., Taha M, Nezerwa E, Nam HJ, Protein Pept Lett. 2016;23(10):862-866. PMID:27586300
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (5kaz.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 5KAZ
  • CSU: Contacts of Structural Units for 5KAZ
  • Structure Factors (247 Kb)
  • Retrieve 5KAZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KAZ from S2C, [Save to disk]
  • Re-refined 5kaz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KAZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kaz_A] [5kaz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KAZ
  • Community annotation for 5KAZ at PDBWiki (http://pdbwiki.org)

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