5KCO	Transferase	date	Jun 06, 2016
title	Setdb1 In Complex With An Early Stage, Low Affinity Fragment Modelled At Reduced Occupancy
authors	W.Tempel, R.J.Harding, P.Mader, E.Dobrovetsky, J.R.Walker, P.J.Br M.Schapira, P.Collins, N.Pearce, J.Brandao-Neto, A.Douangamath, Delft, C.Bountra, C.H.Arrowsmith, A.M.Edwards, V.Santhakumar, St Genomics Consortium (Sgc)
compound		source
Molecule: Histone-Lysine N-Methyltransferase Setdb1 Chain: A Fragment: Unp Residues 196-403 Synonym: Erg-Associated Protein With Set Domain,Eset,Histon Methyltransferase 4,H3-K9-Hmtase 4,Lysine N-Methyltransfera Domain Bifurcated 1; Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Setdb1, Kiaa0067, Kmt1e Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Codon Plus Expression_system_plasmid: Pet28-Mhl
symmetry	Space Group: P 21 21 21	R_factor 0.183 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.772 63.761 70.522 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.47 Å
ligand	6RO, DMS, SO4, UNX	enzyme	Transferase E.C.2.1.1.43 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (5kco.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 5KCO CSU: Contacts of Structural Units for 5KCO Structure Factors (5817 Kb) Retrieve 5KCO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KCO from S2C, [Save to disk] Re-refined 5kco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KCO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KCO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kco_A] [5kco] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KCO: [TUDOR ] by SMART

Other resources with information on 5KCO

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