5KDG date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, SO4 enzyme
Gene DD95 ; ERS450001 ; SEETMRM9437 ; TJ44
Primary referenceCrystal Structure of the Salmonella Typhimurium Effector GtgE., Xu C, Kozlov G, Wong K, Gehring K, Cygler M, PLoS One. 2016 Dec 6;11(12):e0166643. doi: 10.1371/journal.pone.0166643., eCollection 2016. PMID:27923041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5kdg.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (5kdg.pdb2.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 5KDG
  • CSU: Contacts of Structural Units for 5KDG
  • Structure Factors (599 Kb)
  • Retrieve 5KDG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KDG from S2C, [Save to disk]
  • Re-refined 5kdg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KDG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kdg] [5kdg_A]
  • SWISS-PROT database:

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