5KE0 Transferase Transferase Inhibitor date Jun 09, 2016
title Discovery Of 1-1h-Pyrazolo 4,3-C Pyridine-6-Yl Urea Inhibito Extracellular Signal Regulated Kinase Erk For The Treatment Cancers
authors A.Hruza, J.Lim
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Mapk 1,Ert1,Extracellular Signal-Regulated Kinase Map Kinase Isoform P42,P42-Mapk,Mitogen-Activated Protein K Mapk 2;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Mapk1, Erk2, Mapk, Prkm1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 2
R_factor 0.168 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.105 91.334 62.917 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand 6S9, SO4 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • MAP kinase activity
  • MAP kinase kinase activity


  • Primary referenceDiscovery of 1-(1H-Pyrazolo[4,3-c]pyridin-6-yl)urea Inhibitors of Extracellular Signal-Regulated Kinase (ERK) for the Treatment of Cancers., Lim J, Kelley EH, Methot JL, Zhou H, Petrocchi A, Chen H, Hill SE, Hinton MC, Hruza A, Jung JO, Maclean JK, Mansueto M, Naumov GN, Philippar U, Raut S, Spacciapoli P, Sun D, Siliphaivanh P, J Med Chem. 2016 Jul 1. PMID:27329786
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (5ke0.pdb1.gz) 241 Kb
  • LPC: Ligand-Protein Contacts for 5KE0
  • CSU: Contacts of Structural Units for 5KE0
  • Structure Factors (1322 Kb)
  • Retrieve 5KE0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KE0 from S2C, [Save to disk]
  • Re-refined 5ke0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KE0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KE0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ke0_A] [5ke0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KE0: [S_TKc ] by SMART
  • Other resources with information on 5KE0
  • Community annotation for 5KE0 at PDBWiki (http://pdbwiki.org)

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