5KE2 Transcription date Jun 09, 2016
title Crystal Structure Of Setdb1 Tudor Domain In Complex With Inh Xst06472a
authors A.Dong, A.Iqbal, P.Mader, E.Dobrovetsky, J.R.Walker, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, Structural Genomics Co (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase Setdb1
Chain: A
Synonym: Erg-Associated Protein With Set Domain,Eset,Histon Methyltransferase 4,H3-K9-Hmtase 4,Lysine N-Methyltransfera Domain Bifurcated 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Setdb1, Kiaa0067, Kmt1e
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.816 63.891 69.793 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand 6S4, EDO, SO4, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (5ke2.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5KE2
  • CSU: Contacts of Structural Units for 5KE2
  • Structure Factors (2139 Kb)
  • Retrieve 5KE2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KE2 from S2C, [Save to disk]
  • Re-refined 5ke2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KE2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KE2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ke2] [5ke2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KE2: [TUDOR ] by SMART
    • Other resources with information on 5KE2
  • Community annotation for 5KE2 at PDBWiki (http://pdbwiki.org)

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