5KE8 mouse Klf4 E446P ZnF1-3 and MpG/MpG sequence DNA complex structure date
authors Hashimoto, H., Cheng, X.
compound source
symmetry
R_factor
R_Free 0.2697
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
ligand 5CM, ZN enzyme
Primary referenceDistinctive Klf4 mutants determine preference for DNA methylation status., Hashimoto H, Wang D, Steves AN, Jin P, Blumenthal RM, Zhang X, Cheng X, Nucleic Acids Res. 2016 Sep 4. pii: gkw774. PMID:27596594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (5ke8.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 5KE8
  • CSU: Contacts of Structural Units for 5KE8
  • Structure Factors (99 Kb)
  • Retrieve 5KE8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KE8 from S2C, [Save to disk]
  • Re-refined 5ke8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KE8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KE8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ke8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ke8_B] [5ke8_A] [5ke8] [5ke8_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KE8: [ZnF_C2H2 ] by SMART
  • Other resources with information on 5KE8
  • Community annotation for 5KE8 at PDBWiki (http://pdbwiki.org)

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