5KE8	Transcription Dna	date	Jun 09, 2016
title	Mouse Klf4 E446p Znf1-3 And Mpgmpg Sequence Dna Complex Str
authors	H.Hashimoto, X.Cheng
compound		source
Molecule: Krueppel-Like Factor 4 Chain: A Fragment: Unp Residues 396-483 Synonym: Epithelial Zinc Finger Protein Ezf,Gut-Enriched Kr Like Factor; Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Klf4, Ezf, Gklf, Zie Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Codon Plus Expression_system_vector_type: Pgex-6p-1
Molecule: Dna (5'-D(Gpapgpgp(5cm)Pgptpgpgpc)-3') Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Gpcpcpap(5cm)Pgpcpcptpc)-3') Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 43 21 2	R_factor 0.229 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.450 50.450 130.490 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.45 Å
ligand	5CM, ZN	enzyme
Primary reference	Distinctive Klf4 mutants determine preference for DNA methylation status., Hashimoto H, Wang D, Steves AN, Jin P, Blumenthal RM, Zhang X, Cheng X, Nucleic Acids Res. 2016 Sep 4. pii: gkw774. PMID:27596594

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (5ke8.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 5KE8 CSU: Contacts of Structural Units for 5KE8 Structure Factors (99 Kb) Retrieve 5KE8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KE8 from S2C, [Save to disk] Re-refined 5ke8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KE8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KE8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ke8_B] [5ke8_A] [5ke8] [5ke8_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KE8: [ZnF_C2H2 ] by SMART

Other resources with information on 5KE8

Community annotation for 5KE8 at PDBWiki (http://pdbwiki.org)

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