5KG4 Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s then with 10 mM Mg2+ for 60s date
authors Gao, Y., Yang, W.
compound source
symmetry
R_factor
R_Free 0.2232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand DPO, DTP, GOL, MG, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCapture of a third Mg(2)(+) is essential for catalyzing DNA synthesis., Gao Y, Yang W, Science. 2016 Jun 10;352(6291):1334-7. doi: 10.1126/science.aad9633. PMID:27284197
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5kg4.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 5KG4
  • CSU: Contacts of Structural Units for 5KG4
  • Structure Factors (1021 Kb)
  • Retrieve 5KG4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KG4 from S2C, [Save to disk]
  • Re-refined 5kg4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KG4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KG4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5kg4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kg4_P] [5kg4] [5kg4_T] [5kg4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KG4
  • Community annotation for 5KG4 at PDBWiki (http://pdbwiki.org)

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