5KGX date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 7SK, CAF, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIndole-based allosteric inhibitors of HIV-1 integrase., Patel PA, Kvaratskhelia N, Mansour Y, Antwi J, Feng L, Koneru P, Kobe MJ, Jena N, Shi G, Mohamed MS, Li C, Kessl JJ, Fuchs JR, Bioorg Med Chem Lett. 2016 Oct 1;26(19):4748-52. doi: 10.1016/j.bmcl.2016.08.037., Epub 2016 Aug 13. PMID:27568085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (5kgx.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5KGX
  • CSU: Contacts of Structural Units for 5KGX
  • Structure Factors (96 Kb)
  • Retrieve 5KGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KGX from S2C, [Save to disk]
  • Re-refined 5kgx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KGX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5kgx from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kgx] [5kgx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KGX
  • Community annotation for 5KGX at PDBWiki (http://pdbwiki.org)

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