5KH6	Transferase	date	Jun 14, 2016
title	Setdb1 In Complex With A Fragment Candidate
authors	J.R.Walker, R.J.Harding, P.Mader, E.Dobrovetsky, A.Dong, P.Collin N.Pearce, J.Brandao-Neto, A.Douangamath, F.Von Delft, P.J.Brown M.Schapira, C.H.Arrowsmith, A.M.Edwards, V.Santhakumar, Structu Genomics Consortium (Sgc)
compound		source
Molecule: Histone-Lysine N-Methyltransferase Setdb1 Chain: A Fragment: Tudor Domain Synonym: Erg-Associated Protein With Set Domain,Eset,Histon Methyltransferase 4,H3-K9-Hmtase 4,Lysine N-Methyltransfera Domain Bifurcated 1; Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Setdb1, Kiaa0067, Kmt1e Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Codon Plus Expression_system_plasmid: Pet28-Mhl
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.760 63.810 70.310 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	6SU, ACT, CL, DMS, EDO, GOL, PEG, SO4	enzyme	Transferase E.C.2.1.1.43 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (5kh6.pdb1.gz) 78 Kb LPC: Ligand-Protein Contacts for 5KH6 CSU: Contacts of Structural Units for 5KH6 Structure Factors (453 Kb) Retrieve 5KH6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KH6 from S2C, [Save to disk] Re-refined 5kh6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KH6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KH6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kh6_A] [5kh6] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KH6: [TUDOR ] by SMART

Other resources with information on 5KH6

Community annotation for 5KH6 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---