5KHY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 19W, ETA, ZN enzyme
Primary referenceGenetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates., Stanley M, Virdee S, Chembiochem. 2016 Aug 3;17(15):1472-80. doi: 10.1002/cbic.201600138. Epub 2016, Jun 27. PMID:27197715
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5khy.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5KHY
  • CSU: Contacts of Structural Units for 5KHY
  • Structure Factors (57 Kb)
  • Retrieve 5KHY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KHY from S2C, [Save to disk]
  • Re-refined 5khy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KHY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5khy] [5khy_A] [5khy_B]
  • SWISS-PROT database:
  • Domain found in 5KHY: [UBQ ] by SMART

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