OCA Atlas for 5KI6

5KI6

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

6U0, IPH

enzyme

Gene
Ontology

Chain	Function	Process	Component
A	core promoter sequence-speci... translation initiation facto... endoribonuclease activity endoribonuclease activity, p... siRNA binding endoribonuclease activity, c...

Primary reference

Structure-Guided Control of siRNA Off-Target Effects., Suter SR, Sheu-Gruttadauria J, Schirle NT, Valenzuela R, Ball-Jones AA, Onizuka K, MacRae IJ, Beal PA, J Am Chem Soc. 2016 Jul 20;138(28):8667-9. doi: 10.1021/jacs.6b06137. Epub 2016, Jul 12. PMID:27387838

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]

Biological Unit Coordinates (5ki6.pdb1.gz) 136 Kb

LPC: Ligand-Protein Contacts for 5KI6

CSU: Contacts of Structural Units for 5KI6

Structure Factors (3114 Kb)

Retrieve 5KI6 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5KI6 from S2C, [Save to disk]

Re-refined 5ki6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KI6 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ki6] [5ki6_A] [5ki6_B]

SWISS-PROT database:

Domains found in 5KI6: [DUF1785] [PAZ] [Piwi ] by SMART

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