5KK1 Transcription Dna date Jun 20, 2016
title Structure Of Pnob8 Aspa-Dna Complex.
authors M.Schumacher
compound source
Molecule: Aspa
Chain: C, D, A, B, E, F
Engineered: Yes
 Organism_scientific: Sulfolobus Sp. Nob8h2
Organism_taxid: 84600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (31-Mer)
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (31-Mer)
Chain: N
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.216 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.516 55.927 99.964 90.00 109.53 90.00
method X-Ray Diffractionresolution 3.38 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructures of archaeal DNA segregation machinery reveal bacterial and eukaryotic linkages., Schumacher MA, Tonthat NK, Lee J, Rodriguez-Castaneda FA, Chinnam NB, Kalliomaa-Sanford AK, Ng IW, Barge MT, Shaw PL, Barilla D, Science. 2015 Sep 4;349(6252):1120-4. doi: 10.1126/science.aaa9046. PMID:26339031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (5kk1.pdb1.gz) 114 Kb
  • CSU: Contacts of Structural Units for 5KK1
  • Structure Factors (122 Kb)
  • Retrieve 5KK1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KK1 from S2C, [Save to disk]
  • Re-refined 5kk1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KK1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KK1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kk1_F] [5kk1_C] [5kk1_N] [5kk1_B] [5kk1_E] [5kk1_D] [5kk1] [5kk1_P] [5kk1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KK1: [HTH_ARSR ] by SMART
    • Other resources with information on 5KK1
  • Community annotation for 5KK1 at PDBWiki (http://pdbwiki.org)

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