5KL7	Transcription Dna	date	Jun 23, 2016
title	Wilms Tumor Protein (Wt1) Znf2-4q369r In Complex With Carbox
authors	H.Hashimoto, X.Cheng
compound		source
Molecule: Wilms Tumor Protein Chain: A Fragment: Unp Residues 333-420 Synonym: Wt33 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wt1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Ril Codon Plus Expression_system_vector_type: Pgex-6p-1 Expression_system_plasmid: Pxc1302
Molecule: Dna (5'-D(Apgpcpgptpgpgpgp(1cc)Pgpt)-3 Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Tpap(5cm)Pgpcpcpcpapcpgpc)-3 Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 2	R_factor 0.164 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.458 77.797 35.683 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.58 Å
ligand	1CC, 5CM, EDO, ZN	enzyme
Primary reference	Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications., Hashimoto H, Zhang X, Zheng Y, Wilson GG, Cheng X, Nucleic Acids Res. 2016 Sep 4. pii: gkw766. PMID:27596598

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (5kl7.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 5KL7 CSU: Contacts of Structural Units for 5KL7 Structure Factors (434 Kb) Retrieve 5KL7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KL7 from S2C, [Save to disk] Re-refined 5kl7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KL7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KL7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kl7] [5kl7_B] [5kl7_C] [5kl7_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KL7: [ZnF_C2H2 ] by SMART

Other resources with information on 5KL7

Community annotation for 5KL7 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---