5KLU Electron Transport date Jun 25, 2016
title Crystal Structure Of A Domain-Swapped Dimer Of Yeast Iso-1-C C With Omega-Undecylenyl-Beta-D-Maltopyranoside
authors B.E.Bowler, F.G.Whitby
compound source
Molecule: Cytochrome C Iso-1
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Cyc1, Yjr048w, J1653
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 2
R_factor 0.201 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.489 61.438 74.165 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand 6UZ, HEC, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCytochrome c Can Form a Well-Defined Binding Pocket for Hydrocarbons., McClelland LJ, Steele HB, Whitby FG, Mou TC, Holley D, Ross JB, Sprang SR, Bowler BE, J Am Chem Soc. 2016 Dec 28;138(51):16770-16778. doi: 10.1021/jacs.6b10745. Epub, 2016 Dec 19. PMID:27990813
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5klu.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 5KLU
  • CSU: Contacts of Structural Units for 5KLU
  • Structure Factors (548 Kb)
  • Retrieve 5KLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KLU from S2C, [Save to disk]
  • Re-refined 5klu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KLU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5klu_A] [5klu] [5klu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KLU
  • Community annotation for 5KLU at PDBWiki (http://pdbwiki.org)

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