5KMQ The structure of I379E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum date
authors Cook, G.M., Aragao, D., Nakatani, Y.
compound source
symmetry
R_factor
R_Free 0.2692
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand FAD enzyme
Gene CATHTA2
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe mechanism of catalysis by type-II NADH:quinone oxidoreductases., Blaza JN, Bridges HR, Aragao D, Dunn EA, Heikal A, Cook GM, Nakatani Y, Hirst J, Sci Rep. 2017 Jan 9;7:40165. doi: 10.1038/srep40165. PMID:28067272
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (5kmq.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (5kmq.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 5KMQ
  • CSU: Contacts of Structural Units for 5KMQ
  • Structure Factors (3371 Kb)
  • Retrieve 5KMQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KMQ from S2C, [Save to disk]
  • Re-refined 5kmq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KMQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KMQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kmq_C] [5kmq_A] [5kmq_D] [5kmq_B] [5kmq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KMQ
  • Community annotation for 5KMQ at PDBWiki (http://pdbwiki.org)

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