5KN8	Hydrolase Dna	date	Jun 27, 2016
title	Muty N-Terminal Domain In Complex With Undamaged Dna
authors	L.Wang, S.Chakravarthy, G.L.Verdine
compound		source
Molecule: Adenine Dna Glycosylase Chain: A Fragment: Unp Residues 1-229 Synonym: Oxog:A-Specific Adenine Glycosylase Ec: 3.2.2.- Engineered: Yes Mutation: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Gene: Muty Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Aptpcpcptpgptpgpcpt)-3') Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422
Molecule: Dna (5'-D(Apgpcpapcpapgpgpapt)-3') Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422
symmetry	Space Group: P 1 21 1	R_factor 0.167 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.200 38.618 83.796 90.00 104.00 90.00
method	X-Ray Diffraction	resolution	1.81 Å
ligand	CA, SF4	enzyme	Hydrolase E.C.3.2.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Basis for the Lesion-scanning Mechanism of the Bacterial MutY DNA Glycosylase., Wang L, Chakravarthy S, Verdine GL, J Biol Chem. 2017 Jan 27. pii: jbc.M116.757039. doi: 10.1074/jbc.M116.757039. PMID:28130451

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (5kn8.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 5KN8 CSU: Contacts of Structural Units for 5KN8 Structure Factors (1807 Kb) Retrieve 5KN8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KN8 from S2C, [Save to disk] Re-refined 5kn8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KN8 in 3D

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Visual 3D analysis of 5KN8

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kn8_D] [5kn8] [5kn8_C] [5kn8_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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