5KNM Protein Binding date Jun 28, 2016
title Human Leukocyte Antigen F (Hla-F) Presents Peptides And Regu Immunity Through Interactions With Nk-Cell Receptors
authors C.L.Dulberger, E.J.Adams
compound source
Molecule: Cdna Flj39643 Fis, Clone Smint2004023, Highly Sim Hla Class I Histocompatibility Antigen, Alphachain F;
Chain: A
Fragment: Unp Residues 22-305
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell: High Five
Expression_system_plasmid: Pacgp67a

Molecule: Beta-2-Microglobulin
Chain: B
Fragment: Unp Rrsidues 21-119
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_plasmid: Pacgp67a

Molecule: Leukocyte Immunoglobulin-Like Receptor Subfamily 1;
Chain: D
Fragment: Unp Residues 24-221
Synonym: Leukocyte Immunoglobulin-Like Receptor 1,Cd85 Anti Family Member J,Immunoglobulin-Like Transcript 2,Ilt-2, Monocytemacrophage Immunoglobulin-Like Receptor 7,Mir-7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lilrb1, Ilt2, Lir1, Mir7
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Peptide Ile-Leu-Arg-Trp-Glu-Gln
Chain: N
Engineered: Yes

Organism_scientific: Trichoplusia Ni
Organism_taxid: 7111
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 6 2 2
R_factor 0.303 R_Free 0.326
crystal
cell
length a length b length c angle alpha angle beta angle gamma
231.820 231.820 73.250 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceHuman Leukocyte Antigen F Presents Peptides and Regulates Immunity through Interactions with NK Cell Receptors., Dulberger CL, McMurtrey CP, Holzemer A, Neu KE, Liu V, Steinbach AM, Garcia-Beltran WF, Sulak M, Jabri B, Lynch VJ, Altfeld M, Hildebrand WH, Adams EJ, Immunity. 2017 Jun 20;46(6):1018-1029.e7. doi: 10.1016/j.immuni.2017.06.002. PMID:28636952
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (5knm.pdb1.gz) 199 Kb
  • CSU: Contacts of Structural Units for 5KNM
  • Structure Factors (389 Kb)
  • Retrieve 5KNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KNM from S2C, [Save to disk]
  • Re-refined 5knm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KNM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5knm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5knm_N] [5knm_A] [5knm_D] [5knm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KNM
  • Community annotation for 5KNM at PDBWiki (http://pdbwiki.org)

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