5KO9 Dna Binding Protein date Jun 29, 2016
title Crystal Structure Of The Srap Domain Of Human Hmces Protein
authors L.Halabelian, Y.Li, C.Bountra, A.M.Edwards, C.H.Arrowsmith, Struc Genomics Consortium (Sgc)
compound source
Molecule: Embryonic Stem Cell-Specific 5-Hydroxymethylcytos Binding Protein;
Chain: A
Synonym: Es Cell-Specific 5hmc-Binding Protein,Putative Pep Srapd1,Srap Domain-Containing Protein 1;
Ec: 3.4.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmces, C3orf37, Dc12, Srapd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 1 2 1
R_factor 0.182 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.102 44.745 82.901 90.00 107.15 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand UNX enzyme Hydrolase E.C.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (5ko9.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 5KO9
  • CSU: Contacts of Structural Units for 5KO9
  • Structure Factors (4485 Kb)
  • Retrieve 5KO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KO9 from S2C, [Save to disk]
  • Re-refined 5ko9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KO9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ko9_A] [5ko9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KO9
  • Community annotation for 5KO9 at PDBWiki (http://pdbwiki.org)

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