5KOD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	AMP, IAC, SO4	enzyme
Gene Ontology	Chain Function Process Component D, C, A, B
Primary reference	Arabidopsis thaliana GH3.5 acyl acid amido synthetase mediates metabolic crosstalk in auxin and salicylic acid homeostasis., Westfall CS, Sherp AM, Zubieta C, Alvarez S, Schraft E, Marcellin R, Ramirez L, Jez JM, Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13917-13922. Epub 2016 Nov 14. PMID:27849615

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (764 Kb) [Save to disk] Biological Unit Coordinates (5kod.pdb1.gz) 193 Kb Biological Unit Coordinates (5kod.pdb2.gz) 194 Kb Biological Unit Coordinates (5kod.pdb3.gz) 192 Kb Biological Unit Coordinates (5kod.pdb4.gz) 191 Kb LPC: Ligand-Protein Contacts for 5KOD CSU: Contacts of Structural Units for 5KOD Structure Factors (2531 Kb) Retrieve 5KOD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KOD from S2C, [Save to disk] Re-refined 5kod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KOD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kod] [5kod_A] [5kod_B] [5kod_C] [5kod_D] SWISS-PROT database:

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