5KOZ Lyase date Jul 01, 2016
title Structure Function Studies Of R. Palustris Rubisco (K192c Mu Cabp-Bound)
authors M.A.Arbing, J.A.North, S.Satagopan, F.R.Tabita
compound source
Molecule: Ribulose Bisphosphate Carboxylase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Rubisco
Ec: 4.1.1.39
Engineered: Yes
Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 1076
Gene: Cbbm, Rpa4641
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1
R_factor 0.200 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.460 110.620 166.850 89.96 101.77 104.88
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Lyase E.C.4.1.1.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2572 Kb) [Save to disk]
  • Biological Unit Coordinates (5koz.pdb1.gz) 1282 Kb
  • Biological Unit Coordinates (5koz.pdb2.gz) 1289 Kb
  • CSU: Contacts of Structural Units for 5KOZ
  • Structure Factors (1815 Kb)
  • Retrieve 5KOZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KOZ from S2C, [Save to disk]
  • Re-refined 5koz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KOZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KOZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5koz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5koz_L] [5koz_E] [5koz_H] [5koz_I] [5koz_B] [5koz_G] [5koz_K] [5koz_F] [5koz_A] [5koz_C] [5koz_J] [5koz_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KOZ
  • Community annotation for 5KOZ at PDBWiki (http://pdbwiki.org)

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